diff --git a/workflow/scripts/splitStudy.sh b/workflow/scripts/splitStudy.sh index 95e27a3cbd7990441bd654fd78654b2f01ef040b..1f82af6132dad6148adf506a34769c0af1fe9992 100644 --- a/workflow/scripts/splitStudy.sh +++ b/workflow/scripts/splitStudy.sh @@ -14,7 +14,7 @@ python3 ./workflow/scripts/splitStudy.py -s $1 # run pipeline on replicate RIDs in parallel module load nextflow/20.01.0 module load singularity/3.5.3 -while read repRID; do echo ${repRID}; sleep 15; done < "$1_studyRID.csv" | xargs -P 10 -I {} nextflow -q run workflow/rna-seq.nf --repRID {} +while read repRID; do echo ${repRID}; sleep 15; done < "$1_studyRID.csv" | xargs -P 5 -I {} nextflow -q run workflow/rna-seq.nf --repRID {} # cleanup study RID files rm $1_studyRID.json