From 47a270b6b8201138ee6ec00272330dacf48ebf11 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 4 Jan 2021 19:24:43 -0600
Subject: [PATCH] Add missing var
---
workflow/rna-seq.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 5172c25..3da24e2 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -1980,8 +1980,8 @@ process failExecutionRun {
then
#pipelineError_details=\$(echo "**Submitted metadata does not match infered:** ")
pipelineError_details=\$(echo "**Submitted metadata does not match infered:**\\n ")
- pipelineError_details=\$(echo "|Metadata|Submitted value|Inferred value|\\n ")
- pipelineError_details=\$(echo "|:-:|-:|-:|\\n")
+ pipelineError_details=\$(echo \${pipelineError_details}"|Metadata|Submitted value|Inferred value|\\n ")
+ pipelineError_details=\$(echo \${pipelineError_details}"|:-:|-:|-:|\\n")
if ${pipelineError_ends}
then
if [ "${endsMeta}" == "se" ]
--
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