From 4726f503f154ef215ae258d8577a0793636f34fb Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 18 Mar 2021 21:08:37 -0500
Subject: [PATCH] Make dummy R2 fastq if none present

---
 rna-seq.nf | 1 +
 1 file changed, 1 insertion(+)

diff --git a/rna-seq.nf b/rna-seq.nf
index 031040a..58a57fa 100644
--- a/rna-seq.nf
+++ b/rna-seq.nf
@@ -278,6 +278,7 @@ process getData {
     if [ "\${fastqCount}" == "0" ]
     then
       touch dummy.R1.fastq.gz
+      touch dummy.R2.fastq.gz
     fi
     echo "\${fastqCount}" > fastqCount.csv
 
-- 
GitLab