From 4495ee5b5d2814b047dc2640c2416f04ea20e68f Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 30 Nov 2020 16:27:24 -0600
Subject: [PATCH] Fix CI unit uploadInputBag
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 91597b7..ad689d5 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -290,7 +290,7 @@ uploadInputBag:
- hatrac=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org ls /hatrac/resources/rnaseq/pipeline/input_bag/ | grep -o TEST)
- >
if [ -z "${hatrac}" ]; then
- singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host $dev.gudmap.org mkdir /hatrac/resources/rnaseq/pipeline/input_bag/TEST
+ singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org mkdir /hatrac/resources/rnaseq/pipeline/input_bag/TEST
fi
- echo THIS IS A TEST FILE > test.txt
- md5=$(md5sum ./test.txt | awk '{ print $1 }')
--
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