diff --git a/rna-seq.nf b/rna-seq.nf index 550864aaba70d2602297880bfbed7b0b93786f4c..eb7e07514e7a8133df3637f63c41cc71e5fb946b 100644 --- a/rna-seq.nf +++ b/rna-seq.nf @@ -812,7 +812,7 @@ process seqwho { speciesErrorSeqwho=true speciesErrorSeqwho_details=\$(echo "**Infered species and or sequencing type confidence is low:**\\n") speciesErrorSeqwho_details=\$(echo \${speciesErrorSeqwho_details}"|fastq|Infered species confidence|Infered sequencing type confidence|\\n") - speciesErrorSeqwho_details=\$(echo \${speciesErrorSeqwho_details}""|:--|:--:|:--:|\\n) + speciesErrorSeqwho_details=\$(echo \${speciesErrorSeqwho_details}"|:--|:--:|:--:|\\n") speciesErrorSeqwho_details=\$(echo \${speciesErrorSeqwho_details}"|Read 1|\${speciesConfidenceR1}|\${seqtypeConfidenceR1}|\\n") if [ "${ends}" == "pe" ] then