diff --git a/get-updated-badge-info.sh b/get-updated-badge-info.sh index 7309824b764677757549159ff62224c21a42a749..32d2defa2a2f382c4e4eabbb83ba7a3282fb5e5b 100644 --- a/get-updated-badge-info.sh +++ b/get-updated-badge-info.sh @@ -1,19 +1,19 @@ #!/bin/bash echo "collecting stats for badges" -latest_release_tag=$(git tag --sort=-committerdate -l *.*.* | head -1) +latest_release_tag=$(singularity run 'docker://gudmaprbk/gudmap-rbk_base:1.0.0' git tag --sort=-committerdate -l *.*.* | head -1) echo "latest_release_tag =" ${latest_release_tag} -current_pipeline_version=$(git show ${latest_release_tag}:workflow/nextflow.config | grep -o version.* | grep -oP "(?<=').*(?=')") +current_pipeline_version=$(singularity run 'docker://gudmaprbk/gudmap-rbk_base:1.0.0' git show ${latest_release_tag}:workflow/nextflow.config | grep -o version.* | grep -oP "(?<=').*(?=')") echo "current_pipeline_version =" ${current_pipeline_version} -current_nextflow_version=$(git show ${latest_release_tag}:workflow/nextflow.config | grep -o nextflowVersion.* | grep -oP "(?<=').*(?=')") +current_nextflow_version=$(singularity run 'docker://gudmaprbk/gudmap-rbk_base:1.0.0' git show ${latest_release_tag}:workflow/nextflow.config | grep -o nextflowVersion.* | grep -oP "(?<=').*(?=')") echo "current_nextflow_version =" ${current_nextflow_version} -master_pipeline_version=$(git show master:workflow/nextflow.config | grep -o version.* | grep -oP "(?<=').*(?=')") +master_pipeline_version=$(singularity run 'docker://gudmaprbk/gudmap-rbk_base:1.0.0' git show master:workflow/nextflow.config | grep -o version.* | grep -oP "(?<=').*(?=')") echo "master_pipeline_version =" ${master_pipeline_version} -master_nextflow_version=$(git show master:workflow/nextflow.config | grep -o nextflowVersion.* | grep -oP "(?<=').*(?=')") +master_nextflow_version=$(singularity run 'docker://gudmaprbk/gudmap-rbk_base:1.0.0' git show master:workflow/nextflow.config | grep -o nextflowVersion.* | grep -oP "(?<=').*(?=')") echo "master_nextflow_version =" ${master_nextflow_version} -develop_pipeline_version=$(git show develop:workflow/nextflow.config | grep -o version.* | grep -oP "(?<=').*(?=')") +develop_pipeline_version=$(singularity run 'docker://gudmaprbk/gudmap-rbk_base:1.0.0' git show develop:workflow/nextflow.config | grep -o version.* | grep -oP "(?<=').*(?=')") echo "develop_pipeline_version =" ${develop_pipeline_version} -develop_nextflow_version=$(git show develop:workflow/nextflow.config | grep -o nextflowVersion.* | grep -oP "(?<=').*(?=')") +develop_nextflow_version=$(singularity run 'docker://gudmaprbk/gudmap-rbk_base:1.0.0' git show develop:workflow/nextflow.config | grep -o nextflowVersion.* | grep -oP "(?<=').*(?=')") echo "develop_nextflow_version =" ${develop_nextflow_version} echo "collecting badges"