From 41565810eee70525814e9110f71d1bf8e9684b95 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Fri, 8 Jan 2021 16:47:07 -0600
Subject: [PATCH] Get ready for 1.0.0 version.

---
 README.md                       | 7 ++++---
 docs/software_versions_mqc.yaml | 4 ++--
 workflow/nextflow.config        | 2 +-
 3 files changed, 7 insertions(+), 6 deletions(-)

diff --git a/README.md b/README.md
index 2b0ab2f..e83ea8c 100644
--- a/README.md
+++ b/README.md
@@ -4,9 +4,10 @@
 |[![pipeline](https://gudmap_rbk.pages.biohpc.swmed.edu/rna-seq/badges/masterPipeline.svg)](https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/tree/master)|[![pipeline](https://gudmap_rbk.pages.biohpc.swmed.edu/rna-seq/badges/developPipeline.svg)](https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/tree/develop)|
 |[![nextflow](https://gudmap_rbk.pages.biohpc.swmed.edu/rna-seq/badges/masterNextflow.svg)](https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/tree/master)|[![nextflow](https://gudmap_rbk.pages.biohpc.swmed.edu/rna-seq/badges/developNextflow.svg)](https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/tree/develop)|
 
-<!--
-[![DOI]()]()
--->
+
+[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4429316.svg)](https://doi.org/10.5281/zenodo.4429316)
+
+
 RNA-Seq Analytic Pipeline for GUDMAP/RBK
 ========================================
 
diff --git a/docs/software_versions_mqc.yaml b/docs/software_versions_mqc.yaml
index 4f0f08b..a32cd14 100755
--- a/docs/software_versions_mqc.yaml
+++ b/docs/software_versions_mqc.yaml
@@ -6,7 +6,7 @@
         description: 'are collected for pipeline version.'
         data: |
             <dl class="dl-horizontal">
-        
+
             <dt>Python</dt><dd>v3.8.3</dd>
             <dt>DERIVA</dt><dd>v1.3.0</dd>
             <dt>BDBag</dt><dd>v1.5.6</dd>
@@ -20,5 +20,5 @@
             <dt>deepTools</dt><dd>v3.5.0</dd>
             <dt>FastQC</dt><dd>v0.11.9</dd>
             <dt>MultiQC</dt><dd>v1.9</dd>
-            <dt>Pipeline Version</dt><dd>v0.1.0</dd>
+            <dt>Pipeline Version</dt><dd>v1.0.0</dd>
             </dl>
diff --git a/workflow/nextflow.config b/workflow/nextflow.config
index 8828d1a..d8d1cab 100644
--- a/workflow/nextflow.config
+++ b/workflow/nextflow.config
@@ -122,6 +122,6 @@ manifest {
   homePage = 'https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq'
   description = 'This pipeline was created to be a standard mRNA-sequencing analysis pipeline which integrates with the GUDMAP and RBK consortium data-hub.'
   mainScript = 'rna-seq.nf'
-  version = 'v0.1.0'
+  version = 'v1.0.0'
   nextflowVersion = '>=19.09.0'
 }
-- 
GitLab