From 413e1ce613c61af6798f546c5d6f8767e05a4dc1 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 14 Jan 2021 12:24:44 -0600
Subject: [PATCH] Output execution run rid to tracking for fail and failPre
Execution
---
workflow/rna-seq.nf | 3 +++
1 file changed, 3 insertions(+)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 2467b11..c36c84c 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -2249,6 +2249,7 @@ process failPreExecutionRun_fastq {
curl -H 'Content-Type: application/json' -X PUT -d \
'{ \
"ID": "${workflow.sessionId}", \
+ "ExecutionRunRID": "'\${rid}'", \
"Failure": "'\${dt}'" \
}' \
"https://9ouc12dkwb.execute-api.us-east-2.amazonaws.com/prod/db/track"
@@ -2330,6 +2331,7 @@ process failPreExecutionRun_species {
curl -H 'Content-Type: application/json' -X PUT -d \
'{ \
"ID": "${workflow.sessionId}", \
+ "ExecutionRunRID": "'\${rid}'", \
"Failure": "'\${dt}'" \
}' \
"https://9ouc12dkwb.execute-api.us-east-2.amazonaws.com/prod/db/track"
@@ -2421,6 +2423,7 @@ process failExecutionRun {
curl -H 'Content-Type: application/json' -X PUT -d \
'{ \
"ID": "${workflow.sessionId}", \
+ "ExecutionRunRID": "'\${rid}'", \
"Failure": "'\${dt}'" \
}' \
"https://9ouc12dkwb.execute-api.us-east-2.amazonaws.com/prod/db/track"
--
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