From 3f71105bb6980899abada414e355db0a82c5db1a Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Sun, 15 Mar 2020 21:11:28 -0500
Subject: [PATCH] Fix spelling errors
---
workflow/rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 12c9f2a..e7ae998 100755
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -401,7 +401,7 @@ process makeFeatureCounts {
script:
"""
if [ "${endsManual_featureCounts }" == "se" ]; then
- featureCounts -R SAM -p -G ${genome} -T `nprioc` -s 1 -a ${gtf} -o ${repRID}.featureCounts ${repRID}.sorted.deduped.bam;
+ featureCounts -R SAM -p -G ${genome} -T `nproc` -s 1 -a ${gtf} -o ${repRID}.featureCounts ${repRID}.sorted.deduped.bam;
elif [ "${endsManual_featureCounts }" == "pe" ]; then
featureCounts -R SAM -p -G ${genome} -T `nproc` -s 1 -p -a ${gtf} -o ${repRID}.featureCounts ${repRID}.sorted.deduped.bam;
fi;
--
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