diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index 12c9f2a91961422e8821fd23826c0f6de8de87ed..e7ae99807e08cae3f3555406885b3987ee683e12 100755 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -401,7 +401,7 @@ process makeFeatureCounts { script: """ if [ "${endsManual_featureCounts }" == "se" ]; then - featureCounts -R SAM -p -G ${genome} -T `nprioc` -s 1 -a ${gtf} -o ${repRID}.featureCounts ${repRID}.sorted.deduped.bam; + featureCounts -R SAM -p -G ${genome} -T `nproc` -s 1 -a ${gtf} -o ${repRID}.featureCounts ${repRID}.sorted.deduped.bam; elif [ "${endsManual_featureCounts }" == "pe" ]; then featureCounts -R SAM -p -G ${genome} -T `nproc` -s 1 -p -a ${gtf} -o ${repRID}.featureCounts ${repRID}.sorted.deduped.bam; fi;