From 3e7d2bebd31e5e6b655e77d69186208c922a20c4 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 12 Mar 2020 20:13:10 -0500
Subject: [PATCH] Fix tin input in unit CO

---
 .gitlab-ci.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 3d8c9fc..3643b92 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -86,7 +86,7 @@ fastqc:
 inferMetadata:
   stage: unit
   script:
-  - singularity run 'docker://bicf/rseqc3.0:2.0.0' tin.py -i /test_data/bam/small/Q-Y5JA_1M.se.sorted.deduped.bam -r /project/BICF/BICF_Core/shared/gudmap/references/GRCh38.p12.v31/bed/genome.bed
+  - singularity run 'docker://bicf/rseqc3.0:2.0.0' tin.py -i ./test_data/bam/small/Q-Y5JA_1M.se.sorted.deduped.bam -r /project/BICF/BICF_Core/shared/gudmap/references/GRCh38.p12.v31/bed/genome.bed
   - pytest -m inferMetadata
 
 integration_se:
-- 
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