From 3cf193933b61ca6fa7424a8f20abcb513c98592f Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 2 Mar 2021 17:21:34 -0600
Subject: [PATCH] Add singularity cache to before script in ci
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 376e3cc..bdef6d6 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -2,6 +2,7 @@ before_script:
- module load python/3.6.4-anaconda
- pip install --user attrs==20.3.0 pytest==6.2.2 pytest-pythonpath==0.7.3 pytest-cov==2.11.1
- module load singularity/3.5.3
+ - export SINGULARITY_CACHEDIR=/project/BICF/BICF_Core/shared/gudmap/singularity_cache/
- module load nextflow/20.01.0
- ln -sfn /project/BICF/BICF_Core/shared/gudmap/test_data/* ./test_data/
- mkdir -p ~/.deriva
@@ -29,7 +30,6 @@ build_badges:
- tags
before_script:
- module load singularity/3.5.3
- - export SINGULARITY_CACHEDIR=/project/BICF/BICF_Core/shared/gudmap/singularity_cache/
- chmod +x ./workflow/scripts/get_updated_badge_info.sh
script:
- echo "Building badges"
--
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