diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 376e3cc67b1336b3b54548ce3651a4d59df0e9fc..bdef6d663b9c226748bc5a5351b36f7d98798ddf 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -2,6 +2,7 @@ before_script: - module load python/3.6.4-anaconda - pip install --user attrs==20.3.0 pytest==6.2.2 pytest-pythonpath==0.7.3 pytest-cov==2.11.1 - module load singularity/3.5.3 + - export SINGULARITY_CACHEDIR=/project/BICF/BICF_Core/shared/gudmap/singularity_cache/ - module load nextflow/20.01.0 - ln -sfn /project/BICF/BICF_Core/shared/gudmap/test_data/* ./test_data/ - mkdir -p ~/.deriva @@ -29,7 +30,6 @@ build_badges: - tags before_script: - module load singularity/3.5.3 - - export SINGULARITY_CACHEDIR=/project/BICF/BICF_Core/shared/gudmap/singularity_cache/ - chmod +x ./workflow/scripts/get_updated_badge_info.sh script: - echo "Building badges"