From 36fc4229115af08710b10c741d8039481fe9718f Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 12 Feb 2021 16:06:30 -0600
Subject: [PATCH] Add quotes around find predicate
---
rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/rna-seq.nf b/rna-seq.nf
index d877bfb..a3da729 100644
--- a/rna-seq.nf
+++ b/rna-seq.nf
@@ -275,7 +275,7 @@ process getData {
sh ${script_bdbagFetch} \${replicate::-13} ${repRID}
echo -e "LOG: fetched" >> ${repRID}.getData.log
- fastqCount=\$(find . -name *.fastq.gz | wc -l)
+ fastqCount=\$(find . -name '*.fastq.gz' | wc -l)
if [ "\${fastqCount}" == "0" ]
then
touch dummy.R1.fastq.gz
--
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