diff --git a/rna-seq.nf b/rna-seq.nf index d877bfb9f35d53fb52c0dcece6cf0f26bb70cd02..a3da72994d10b185116f2fa3cf4586e827a51cc6 100644 --- a/rna-seq.nf +++ b/rna-seq.nf @@ -275,7 +275,7 @@ process getData { sh ${script_bdbagFetch} \${replicate::-13} ${repRID} echo -e "LOG: fetched" >> ${repRID}.getData.log - fastqCount=\$(find . -name *.fastq.gz | wc -l) + fastqCount=\$(find . -name '*.fastq.gz' | wc -l) if [ "\${fastqCount}" == "0" ] then touch dummy.R1.fastq.gz