diff --git a/README.md b/README.md index 1c505f9a8921d0202ec3dd620ca949f40c7ce2fd..fa070798bca6d14f0fd8f7996d77ab77e35135f1 100644 --- a/README.md +++ b/README.md @@ -38,6 +38,7 @@ To Run: * `--refMoVersion` mouse reference version ***(optional, default = 38.p6.vM25)*** * `--refHuVersion` human reference version ***(optional, default = 38.p13.v36)*** * `--refERCCVersion` human reference version ***(optional, default = 92)*** + * `--seqwhoRef` seqwho reference location ***(optional, default = https://cloud.biohpc.swmed.edu/index.php/s/sP48taKmymSkJBM/download)*** * `--upload` option to not upload output back to the data-hub ***(optional, default = false)*** * **true** = upload outputs to the data-hub * **false** = do *NOT* upload outputs to the data-hub