From 331ce5b8c4ec963f0e71780288855f37c38387e9 Mon Sep 17 00:00:00 2001
From: Jeremy Mathews <Jeremy.Mathews@utsouthwestern.edu>
Date: Thu, 19 Nov 2020 15:45:05 -0600
Subject: [PATCH] Fixed RID
---
.gitlab-ci.yml | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 213da88..e4beb0e 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -43,7 +43,7 @@ getData:
script:
- singularity run 'docker://bicf/gudmaprbkfilexfer:2.0.1_indev' bdbag --version > version_bdbag.txt
- ln -sfn `readlink -e ./test_data/auth/cookies.txt` ~/.bdbag/deriva-cookies.txt
- - unzip ./test_data/bag/staging/Replicate_Q-Y5F6.zip
+ - unzip ./test_data/bag/staging/Replicate_Q-Y5JA.zip
- singularity run 'docker://bicf/gudmaprbkfilexfer:2.0.1_indev' bash ./workflow/scripts/bdbagFetch.sh Replicate_Q-Y5F6 Replicate_Q-Y5F6 TEST
- pytest -m getData
artifacts:
@@ -432,7 +432,7 @@ override_inputBag:
script:
- hostname
- ulimit -a
- - nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5F6 --inputBagForce ./test_data/bag/staging/Replicate_Q-Y5F6.zip --ci true
+ - nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5JA --inputBagForce ./test_data/bag/staging/Replicate_Q-Y5JA.zip --ci true
- find . -type f -name "multiqc_data.json" -exec cp {} ./inputBagOverride_PE_multiqc_data.json \;
artifacts:
name: "$CI_JOB_NAME"
--
GitLab