From 32549a04ea43a882289fca18631869a0a79d5658 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 28 Dec 2020 12:58:36 -0600
Subject: [PATCH] Try retyping create qc entry in unit test
---
.gitlab-ci.yml | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 1535a0e..bebbb63 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -338,8 +338,9 @@ uploadQC:
done
echo all old mRNA QC RIDs deleted
fi
+ rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadQC.py -r 17-BTFJ -e 17-BTG4 -p "Single Read" -s forward -l 35 -1 5 -f 1 -n "This is a test mRNA QC" -o staging.gudmap.org -c ${cookie} -u F)
#qcrid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadQC.py -r 17-BTFJ -e 17-BTG4 -p "Single Read" -s forward -l 35 -w 5 -f 1 -n "This is a test mRNA QC" -o staging.gudmap.org -c ${cookie} -u F) &&
- #echo ${qcrid} test mRNA QC created
+ echo ${rid} test mRNA QC created
uploadProcessedFile:
stage: unit
--
GitLab