diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 1535a0e57bb8ea3262b42ab7b14273a80d95ad5b..bebbb63bd5988530255478a789f86e403d2504f4 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -338,8 +338,9 @@ uploadQC: done echo all old mRNA QC RIDs deleted fi + rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadQC.py -r 17-BTFJ -e 17-BTG4 -p "Single Read" -s forward -l 35 -1 5 -f 1 -n "This is a test mRNA QC" -o staging.gudmap.org -c ${cookie} -u F) #qcrid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadQC.py -r 17-BTFJ -e 17-BTG4 -p "Single Read" -s forward -l 35 -w 5 -f 1 -n "This is a test mRNA QC" -o staging.gudmap.org -c ${cookie} -u F) && - #echo ${qcrid} test mRNA QC created + echo ${rid} test mRNA QC created uploadProcessedFile: stage: unit