From 312a6047e9914ce2d25c398cf2226ca227d9d06a Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 11 Jan 2021 23:48:43 -0600
Subject: [PATCH] Fix json uploads to tracking

---
 workflow/rna-seq.nf | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 7d9f92e..0990fdc 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -1258,7 +1258,7 @@ process uploadExecutionRun {
 
   curl -H 'Content-Type: application/json' -X PUT -d \
     '{ \
-      "ID": "${workflow.sessionId}" \
+      "ID": "${workflow.sessionId}", \
       "ExecutionRunRID": "'\${executionRun_rid}'" \
     }' \
     "https://9ouc12dkwb.execute-api.us-east-2.amazonaws.com/prod/db/track"
@@ -2158,7 +2158,7 @@ process finalizeExecutionRun {
   dt=`date +%FT%T.%3N%:z`
   curl -H 'Content-Type: application/json' -X PUT -d \
     '{ \
-      "ID": "${workflow.sessionId}" \
+      "ID": "${workflow.sessionId}", \
       "Complete": "\${dt}" \
     }' \
     "https://9ouc12dkwb.execute-api.us-east-2.amazonaws.com/prod/db/track"
@@ -2248,7 +2248,7 @@ process failPreExecutionRun {
   dt=`date +%FT%T.%3N%:z`
   curl -H 'Content-Type: application/json' -X PUT -d \
     '{ \
-      "ID": "${workflow.sessionId}" \
+      "ID": "${workflow.sessionId}", \
       "Failure": "\${dt}" \
     }' \
     "https://9ouc12dkwb.execute-api.us-east-2.amazonaws.com/prod/db/track"
@@ -2339,7 +2339,7 @@ process failExecutionRun {
   dt=`date +%FT%T.%3N%:z`
   curl -H 'Content-Type: application/json' -X PUT -d \
     '{ \
-      "ID": "${workflow.sessionId}" \
+      "ID": "${workflow.sessionId}", \
       "Failure": "\${dt}" \
     }' \
     "https://9ouc12dkwb.execute-api.us-east-2.amazonaws.com/prod/db/track"
-- 
GitLab