From 31054b214c88cc17ec628777393e0c4dc28ee9e3 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 13 Mar 2020 20:44:11 -0500
Subject: [PATCH] Fix dedup qc output
---
workflow/rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index ec05f53..92d97b0 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -350,7 +350,7 @@ process dedupData {
output:
tuple val ("${repRID}"), path ("${repRID}.sorted.deduped.bam"), path ("${repRID}.sorted.deduped.bam.bai") into dedupBam
- path ("*.deduped.Metrics.txt") into alignQC
+ path ("*.deduped.Metrics.txt") into dedupQC
path ("${repRID}.dedup.out")
path ("${repRID}.dedup.err")
--
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