diff --git a/rna-seq.nf b/rna-seq.nf index 5c2c96d38390cc331a67ab580440178a172279cb..478b742f54bea916b5764b7b2387ea24e8429223 100644 --- a/rna-seq.nf +++ b/rna-seq.nf @@ -266,7 +266,7 @@ process getData { echo -e "LOG: unzipped" >> ${repRID}.getData.log # bag fetch fastq's only and rename by repRID - if [ "${fastqsForce}" != "" ] + if [ "${params.fastqsForce}" != "" ] then echo -e "LOG: fetching replicate bdbag" >> ${repRID}.getData.log fastqCount=\$(sh ${script_bdbagFetch} \${replicate::-13} ${repRID})