From 2f23de580825f4dd0d4a65aafff52e3e9f6fcfcb Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 17 Dec 2020 19:29:24 -0600
Subject: [PATCH] Fix CI uploadQC
---
.gitlab-ci.yml | 2 +-
workflow/scripts/deleteEntry.py | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index b41e230..3d8471b 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -328,7 +328,7 @@ uploadQC:
- ln -sfn `readlink -e ./test_data/auth/credential.json` ./credential.json
- >
exist=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' curl -s https://staging.gudmap.org/ermrest/catalog/2/entity/RNASeq:mRNA_QC/Replicate=17-BTFJ) &&
- cookie=$(cat credential.json | grep -A 1 '"staging.gudmap.org\: {' | grep -o '"cookie": ".*"') &&
+ cookie=$(cat credential.json | grep -A 1 '\"staging.gudmap.org\": {' | grep -o '\"cookie\": \".*\"') &&
cookie=${cookie:11:-1} &&
if [ "${exist}" != "[]" ]; then
rids=$(echo ${exist} | grep -o '\"RID\":\".\{7\}' | sed 's/^.\{7\}\/\/')
diff --git a/workflow/scripts/deleteEntry.py b/workflow/scripts/deleteEntry.py
index 51d4816..1b26509 100644
--- a/workflow/scripts/deleteEntry.py
+++ b/workflow/scripts/deleteEntry.py
@@ -25,7 +25,7 @@ def main(hostname, catalog_number, credential):
rid = args.RID
- print(rid + "deleted")
+ print(rid + " deleted")
if __name__ == '__main__':
--
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