diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index b41e230e80d89c1b77437a274a66b58d0237fc9a..3d8471b0a0e64ff2cf9c391f6a7c0f260f92452c 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -328,7 +328,7 @@ uploadQC: - ln -sfn `readlink -e ./test_data/auth/credential.json` ./credential.json - > exist=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' curl -s https://staging.gudmap.org/ermrest/catalog/2/entity/RNASeq:mRNA_QC/Replicate=17-BTFJ) && - cookie=$(cat credential.json | grep -A 1 '"staging.gudmap.org\: {' | grep -o '"cookie": ".*"') && + cookie=$(cat credential.json | grep -A 1 '\"staging.gudmap.org\": {' | grep -o '\"cookie\": \".*\"') && cookie=${cookie:11:-1} && if [ "${exist}" != "[]" ]; then rids=$(echo ${exist} | grep -o '\"RID\":\".\{7\}' | sed 's/^.\{7\}\/\/') diff --git a/workflow/scripts/deleteEntry.py b/workflow/scripts/deleteEntry.py index 51d48169fc5b3995f882de8aa9aaab55750fb0e5..1b26509a8c1541f65a39e660ec7e6ec158194ef1 100644 --- a/workflow/scripts/deleteEntry.py +++ b/workflow/scripts/deleteEntry.py @@ -25,7 +25,7 @@ def main(hostname, catalog_number, credential): rid = args.RID - print(rid + "deleted") + print(rid + " deleted") if __name__ == '__main__':