From 2c60afce41128fa31861581b3ad6b24fd6dfe9f1 Mon Sep 17 00:00:00 2001 From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu> Date: Thu, 30 Jul 2020 09:48:38 -0500 Subject: [PATCH] Add fastqc commad to unit now that using singularity run --- .gitlab-ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 7bcfc37..8f71ff4 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -112,7 +112,7 @@ makeBigWig: fastqc: stage: unit script: - - singularity run 'docker://bicf/fastqc:2.0.1_indev' ./test_data/fastq/small/Q-Y5F6_1M.R1.fastq.gz -o . + - singularity run 'docker://bicf/fastqc:2.0.1_indev' fastqc ./test_data/fastq/small/Q-Y5F6_1M.R1.fastq.gz -o . - pytest -m fastqc dataQC: -- GitLab