From 2beb83ad227d602f68fa07692fb5b79f8a896d0c Mon Sep 17 00:00:00 2001
From: Gervaise Henry <GHENRY@swmed.org>
Date: Sat, 14 Mar 2020 20:58:36 -0500
Subject: [PATCH] Fix dedupBam input of inferMeta
---
workflow/rna-seq.nf | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 549cf30..6e0f368 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -332,7 +332,6 @@ process alignData {
// Replicate rawBam for multiple process inputs
rawBam.into {
rawBam_dedupData
- rawBam_inferMetadata
}
/*
@@ -423,7 +422,7 @@ process inferMetadata {
input:
path script_inferMeta
path reference_inferMeta
- set val (repRID), path (inBam), path (inBai) from dedupBam_inferMetadata
+ set val (repRID), path (inBam), path (inBai) from dedupBam_inferMeta
output:
path "infer.csv" into inferedMetadata
--
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