diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index ff78339ae1e3030b33e2dcdbc1f91b2f76ebb9aa..12a6ef5eaa1cf8d946dae3040c3dcb00b5c33167 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -80,8 +80,8 @@ makeBigWig:
 makeFeatureCounts:
   stage: unit
   script:
-  - singularity run 'docker://bicf/bicf/subread2:2.0.0' featureCounts -R SAM -p -G /project/BICF/BICF_Core/shared/gudmap/references/GRCh38.p12.v31/genome.fna -T `nproc` -a /project/BICF/BICF_Core/shared/gudmap/references/GRCh38.p12.v31/genome.gtf -o Q-Y5JA_1M.se.featureCounts ./test_data/bam/small/Q-Y5JA_1M.se.sorted.deduped.bam 
-  - singularity run 'docker://bicf/bicf/subread2:2.0.0' Rscript calculateTPM.R --count Q-Y5JA_1M.se.featureCounts
+  - singularity run 'docker://bicf/subread2:2.0.0' featureCounts -R SAM -p -G /project/BICF/BICF_Core/shared/gudmap/references/GRCh38.p12.v31/genome.fna -T `nproc` -a /project/BICF/BICF_Core/shared/gudmap/references/GRCh38.p12.v31/genome.gtf -o Q-Y5JA_1M.se.featureCounts ./test_data/bam/small/Q-Y5JA_1M.se.sorted.deduped.bam 
+  - singularity run 'docker://bicf/subread2:2.0.0' Rscript calculateTPM.R --count Q-Y5JA_1M.se.featureCounts
   - pytest -m makeFeatureCounts
 
 fastqc: