diff --git a/workflow/scripts/parse_meta.py b/workflow/scripts/parse_meta.py index 9a38f29241214d1ac474f83e3ff1b92b266a3fa9..f0dbf6761c4d828939625f003e2311b85a7afcb7 100644 --- a/workflow/scripts/parse_meta.py +++ b/workflow/scripts/parse_meta.py @@ -67,6 +67,8 @@ def main(): stranded = "stranded" elif (metaFile.Has_Strand_Specific_Information.unique() == "no"): stranded = "unstranded" + else + stranded = metaFile.Has_Strand_Specific_Information.unique()[0] print(stranded) # Get spike-in metadata from 'Experiment Settings.csv' @@ -75,6 +77,8 @@ def main(): spike = "yes" elif (metaFile.Used_Spike_Ins.unique() == "no"): spike = "no" + else + stranded = metaFile.Used_Spike_Ins.unique()[0] print(spike) # Get species metadata from 'Experiment.csv' @@ -83,6 +87,8 @@ def main(): species = "Mus musculus" elif (metaFile.Species.unique() == "Homo sapiens"): species = "Homo sapiens" + else + stranded = metaFile.Species.unique()[0] print(species) # Get read length metadata from 'Experiment Settings.csv'