From 279a541b3d50751b018b92e709b92b41bd45c882 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Wed, 15 Jan 2020 10:52:45 -0600
Subject: [PATCH] Add singularity and proxy settings to biohpc nf config
---
workflow/conf/biohpc.config | 11 +++++++++++
1 file changed, 11 insertions(+)
diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config
index 02a3358..20da91a 100755
--- a/workflow/conf/biohpc.config
+++ b/workflow/conf/biohpc.config
@@ -15,4 +15,15 @@ process {
container = 'docker://bicf/trimgalore:1.1'
queue = '256GB,256GBv1,384GB'
}
+}
+
+singularity {
+ enabled = true
+ cacheDir = '/project/shared/bicf_workflow_ref/singularity_images/'
+}
+
+env {
+ http_proxy = 'http://proxy.swmed.edu:3128'
+ https_proxy = 'http://proxy.swmed.edu:3128'
+ all_proxy = 'http://proxy.swmed.edu:3128'
}
\ No newline at end of file
--
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