From 25502c3dab784d3de380517af1770fe2219ee119 Mon Sep 17 00:00:00 2001
From: s181706 <jonathan.gesell@utsouthwestern.edu>
Date: Wed, 22 Jan 2020 10:41:55 -0600
Subject: [PATCH] Reverted to ensure that Trim step is functional.
---
workflow/rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index b769cd9..a96eaf6 100755
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -197,7 +197,7 @@ if (spike == 'yes') {
reference = Channel.fromPath ("/project/BICF/BICF_Core/shared/gudmap/references/GRCm38.P6/hisat2")
}
}
-reference.subscribe { println "$it }
+reference.subscribe { println "$it" }
/*
* trimData: trims any adapter or non-host sequences from the data
--
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