From 23ed57eae2d1172c9d4fa3a7209024a888a4c983 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 12 Feb 2021 09:37:05 -0600
Subject: [PATCH] Change dnanexus executor
---
conf/dnanexus.config | 30 +++++++++++++++---------------
1 file changed, 15 insertions(+), 15 deletions(-)
diff --git a/conf/dnanexus.config b/conf/dnanexus.config
index 69060aa..1109530 100755
--- a/conf/dnanexus.config
+++ b/conf/dnanexus.config
@@ -4,16 +4,16 @@ params {
process {
withName:trackStart {
- executor = 'local'
+ executor = 'dnanexus'
}
withName:getBag {
- executor = 'local'
+ executor = 'dnanexus'
}
withName:getData {
machineType = 'mem1_ssd1_v2_x16'
}
withName:parseMetadata {
- executor = 'local'
+ executor = 'dnanexus'
}
withName:trimData {
machineType = 'mem1_ssd1_v2_x16'
@@ -22,7 +22,7 @@ process {
machineType = 'mem1_ssd1_v2_x16'
}
withName:downsampleData {
- executor = 'local'
+ executor = 'dnanexus'
}
withName:alignSampleData {
machineType = 'mem3_ssd1_v2_x16'
@@ -31,7 +31,7 @@ process {
machineType = 'mem1_ssd1_v2_x16'
}
withName:checkMetadata {
- executor = 'local'
+ executor = 'dnanexus'
}
withName:getRef {
machineType = 'mem1_ssd1_v2_x16'
@@ -55,34 +55,34 @@ process {
machineType = 'mem1_ssd1_v2_x16'
}
withName:aggrQC {
- executor = 'local'
+ executor = 'dnanexus'
}
withName:uploadInputBag {
- executor = 'local'
+ executor = 'dnanexus'
}
withName:uploadExecutionRun {
- executor = 'local'
+ executor = 'dnanexus'
}
withName:uploadQC {
- executor = 'local'
+ executor = 'dnanexus'
}
withName:uploadProcessedFile {
- executor = 'local'
+ executor = 'dnanexus'
}
withName:uploadOutputBag {
- executor = 'local'
+ executor = 'dnanexus'
}
withName:finalizeExecutionRun {
- executor = 'local'
+ executor = 'dnanexus'
}
withName:failPreExecutionRun {
- executor = 'local'
+ executor = 'dnanexus'
}
withName:failExecutionRun {
- executor = 'local'
+ executor = 'dnanexus'
}
withName:uploadQC_fail {
- executor = 'local'
+ executor = 'dnanexus'
}
}
--
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