From 218210f0302e800c5b16c34599b66194e690190b Mon Sep 17 00:00:00 2001
From: Jeremy Mathews <Jeremy.Mathews@utsouthwestern.edu>
Date: Tue, 3 Dec 2019 11:01:10 -0600
Subject: [PATCH] Fix path in validate statement
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 1ee7b3b..b69d702 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -12,5 +12,5 @@ unit:
stage: unit
script:
- singularity run 'docker://bicf/bdbag:1.0' bdbag --materialize ./test_data/File_Q-Y53P.zip
- - singularity run 'docker://bicf/bdbag:1.0' bdbag --validate full
+ - singularity run 'docker://bicf/bdbag:1.0' bdbag --validate full ./test_data/File_Q-Y53P/
- if [[ $(md5sum test_data/File_Q-Y53P/data/assets/Study/Q-Y4H0/Experiment/Q-Y4BY/Replicate/Q-Y5F8/hMARIS_SIX2+_RiboDep#1.gene.rpkm.txt | awk '{ print $1 }') != $(cat test_data/File_Q-Y53P/data/File.csv | cut -d ',' -f10 | tail -1) ]]; then exit 21; fi;
--
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