From 192da4d6f3f8d3d50455d0abbaa99426b4681750 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Mon, 9 Nov 2020 21:47:40 -0600
Subject: [PATCH] Fix regex markdups.
---
workflow/scripts/generate_versions.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/scripts/generate_versions.py b/workflow/scripts/generate_versions.py
index e5f90e0..1ae7840 100644
--- a/workflow/scripts/generate_versions.py
+++ b/workflow/scripts/generate_versions.py
@@ -38,7 +38,7 @@ SOFTWARE_REGEX = {
'Trim Galore!': ['version_trimgalore.txt', r"version (\S+)"],
'HISAT2': ['version_hisat2.txt', r"version (\S+)"],
'Samtools': ['version_samtools.txt', r"samtools (\S+)"],
- 'picard (MarkDuplicates)': ['version_markdups.txt', r"Version: (\S+)"],
+ 'picard (MarkDuplicates)': ['version_markdups.txt', r"(\S\.\S{2}\.\S+)"],
'featureCounts': ['version_featurecounts.txt', r"featureCounts v(\S+)"],
'R': ['version_r.txt', r"R version (\S+)"],
'deepTools': ['version_deeptools.txt', r"deeptools (\S+)"],
--
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