From 18900014312679f3c85323f095ac81191715a390 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 11 Jan 2021 14:27:17 -0600
Subject: [PATCH] Update QC report table
---
workflow/rna-seq.nf | 5 +++++
1 file changed, 5 insertions(+)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 1ab8dee..2bc32e1 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -1935,6 +1935,11 @@ process uploadQC {
echo LOG: mRNA QC RID uploaded - \${qc_rid} >> ${repRID}.uploadQC.log
echo "\${qc_rid}" > qcRID.csv
+
+ rpt=`cat ${repRID}.multiqc_data.json`
+ curl -H 'Content-Type: application/json' -X PUT -d \
+ \${rpt}
+ "https://9ouc12dkwb.execute-api.us-east-2.amazonaws.com/prod/db/qc"
"""
}
--
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