diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index 1ab8deefc64e3fcf3c6283caaca725f4f554124a..2bc32e1c5e437743aa13fa649c8e082d743a3d63 100644 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -1935,6 +1935,11 @@ process uploadQC { echo LOG: mRNA QC RID uploaded - \${qc_rid} >> ${repRID}.uploadQC.log echo "\${qc_rid}" > qcRID.csv + + rpt=`cat ${repRID}.multiqc_data.json` + curl -H 'Content-Type: application/json' -X PUT -d \ + \${rpt} + "https://9ouc12dkwb.execute-api.us-east-2.amazonaws.com/prod/db/qc" """ }