From 1866702830eeaeba2c1925a0e5a0e5c49e08ece5 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 14 Jan 2020 14:11:42 -0600
Subject: [PATCH] Add pytest for getData

---
 workflow/tests/test_getData.py | 14 ++++++++++++++
 1 file changed, 14 insertions(+)
 create mode 100644 workflow/tests/test_getData.py

diff --git a/workflow/tests/test_getData.py b/workflow/tests/test_getData.py
new file mode 100644
index 0000000..c99fc4e
--- /dev/null
+++ b/workflow/tests/test_getData.py
@@ -0,0 +1,14 @@
+#!/usr/bin/env python3
+
+import pytest
+import pandas as pd
+from io import StringIO
+import os
+
+test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
+                '/../../Replicate_16-1ZX4/'
+
+@pytest.mark.getData
+def test_getData():
+    assert os.path.exists(os.path.join(test_output_path, 'bagit.txt'))
+    assert os.path.exists(os.path.join(test_output_path, 'data/assets/Study/16-1ZWP/Experiment/16-1ZWR/Replicate/16-1ZX4/3_1_single.R1.fastq.gz'))
\ No newline at end of file
-- 
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