From 135b3e660fe21f820c11b6d2ddb754c386076340 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 7 Jan 2021 17:56:28 -0600
Subject: [PATCH] Fix infer with species error
---
workflow/rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index d4a6c2b..5e827ab 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -823,7 +823,7 @@ process inferMetadata {
if [ "${speciesForce}" == "" ]
then
speciesError=true
- speciesError_details="**Inference of species returns an ambiguous result:** Percent aligned to human = \${align_hu}\, percent aligned to mouse = \${align_mo}"
+ speciesError_details="**Inference of species returns an ambiguous result:**\\nPercent aligned to human = \${align_hu}\\npercent aligned to mouse = \${align_mo}"
fi
fi
if [ "${speciesForce}" != "" ]
--
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