From 101015617184be7df32b405a41322956f7db9b9b Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 7 Jan 2021 22:52:02 -0600
Subject: [PATCH] Fix fastq force
---
workflow/rna-seq.nf | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 3596bd1..8c247c2 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -268,7 +268,8 @@ if (fastqsForce != "") {
Channel
.fromPath(fastqsForce)
.ifEmpty { exit 1, "override inputBag file not found: ${fastqsForce}" }
- .collect().set {
+ .collect().into {
+ fastqs_parseMetadata
fastqs_trimData
}
} else {
--
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