diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index a09f1786745c1678022cc9c8516b6bb7c61d1cea..7d935f564b7bfb20f9a71f2b22527b031728655b 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -1055,71 +1055,71 @@ dnanexus:
       - badges/
   allow_failure: true
 
-  aws:
-    stage: environment
-    only:
-      variables:
-        - $awsEnv == "true"
-    except:
-      - push
-      - tags
-      - merge_requests
-    script:
-      - hostname
-      - ulimit -a
-      - mkdir -p ./badges/env
-      - curl --request GET https://img.shields.io/badge/Envronment%3A%20AWS-inactive-critical?style=flat > ./badges/env/aws.svg
-      - module load awscli/1.19.17
-      - >
-        export AWS_ACCESS_KEY_ID=${aws_accesskeyid}
-        export AWS_SECRET_ACCESS_KEY=${aws_secretaccesskey}
-        aws configure set region ${aws_region}
-      - aws s3 cp ./test_data/auth/ s3://bicf-output/ci-env/auth/ --exclude "*" --include "c*" --recursive
-      - aws s3 cp ./test_data/fastq/xsmall/ s3://bicf-output/ci-env/input/ --exclude "*" --include "Q-Y5F6_10K.R*.fastq.gz" --recursive
-      - >
-        id=$(aws batch submit-job\
-          --job-name nf-GUDMAP_RBK_ci-env\
-          --job-queue default-bicf\
-          --job-definition nextflow-bicf-nextflow\
-          --container-overrides command=\
-            "utsw-bicf/gudmap_rbk.rna-seq","-r","env.ci",\
-            "-profile","aws",\
-            "--deriva","s3://bicf-output/ci-env/auth/credential.json",\
-            "--bdbag","s3://bicf-output/ci-env/auth/cookies.txt",\
-            "--repRID","Q-Y5F6",\
-            "--source","staging",\
-            "--upload","false",\
-            "--dev","false",\
-            "--ci","true",\
-            "--track","false",\
-            "-with-report","s3://bicf-output/ci-env/output/Q-Y5F6_fastqoverride_report.html",\
-            "--refSource","datahub",\
-            "--outDir","s3://bicf-output/ci-env/output/Q-Y5F6_fastqoverride",\
-            "--fastqsForce","s3://bicf-output/ci-env/input/*.fastq.gz")
-        id=$(echo ${id}| grep -oP "jobId\K.*" | tr -d '"' | tr -d ":" | tr -d " " | tr -d "}")
-      - >
+aws:
+  stage: environment
+  only:
+    variables:
+      - $awsEnv == "true"
+  except:
+    - push
+    - tags
+    - merge_requests
+  script:
+    - hostname
+    - ulimit -a
+    - mkdir -p ./badges/env
+    - curl --request GET https://img.shields.io/badge/Envronment%3A%20AWS-inactive-critical?style=flat > ./badges/env/aws.svg
+    - module load awscli/1.19.17
+    - >
+      export AWS_ACCESS_KEY_ID=${aws_accesskeyid}
+      export AWS_SECRET_ACCESS_KEY=${aws_secretaccesskey}
+      aws configure set region ${aws_region}
+    - aws s3 cp ./test_data/auth/ s3://bicf-output/ci-env/auth/ --exclude "*" --include "c*" --recursive
+    - aws s3 cp ./test_data/fastq/xsmall/ s3://bicf-output/ci-env/input/ --exclude "*" --include "Q-Y5F6_10K.R*.fastq.gz" --recursive
+    - >
+      id=$(aws batch submit-job\
+        --job-name nf-GUDMAP_RBK_ci-env\
+        --job-queue default-bicf\
+        --job-definition nextflow-bicf-nextflow\
+        --container-overrides command=\
+          "utsw-bicf/gudmap_rbk.rna-seq","-r","env.ci",\
+          "-profile","aws",\
+          "--deriva","s3://bicf-output/ci-env/auth/credential.json",\
+          "--bdbag","s3://bicf-output/ci-env/auth/cookies.txt",\
+          "--repRID","Q-Y5F6",\
+          "--source","staging",\
+          "--upload","false",\
+          "--dev","false",\
+          "--ci","true",\
+          "--track","false",\
+          "-with-report","s3://bicf-output/ci-env/output/Q-Y5F6_fastqoverride_report.html",\
+          "--refSource","datahub",\
+          "--outDir","s3://bicf-output/ci-env/output/Q-Y5F6_fastqoverride",\
+          "--fastqsForce","s3://bicf-output/ci-env/input/*.fastq.gz")
+      id=$(echo ${id}| grep -oP "jobId\K.*" | tr -d '"' | tr -d ":" | tr -d " " | tr -d "}")
+    - >
+      status=$(aws batch describe-jobs --jobs ${id} | grep -oP "status\": \K.*" | tr -d '"' | tr -d ',') &&
+      until [[ "${status}" == "SUCCEEDED" || "${status}" == "FAILED" ]]; do
         status=$(aws batch describe-jobs --jobs ${id} | grep -oP "status\": \K.*" | tr -d '"' | tr -d ',') &&
-        until [[ "${status}" == "SUCCEEDED" || "${status}" == "FAILED" ]]; do
-          status=$(aws batch describe-jobs --jobs ${id} | grep -oP "status\": \K.*" | tr -d '"' | tr -d ',') &&
-          echo ${status} &&
-          sleep 30
-        done
-      - >
-        if [ "${status}" == "SUCCEEDED" ]; then
-          curl --request GET https://img.shields.io/badge/Envronment%3A%20AWS-run%20succesful-success?style=flat > ./badges/env/dnanexus.svg
-        else
-          curl --request GET https://img.shields.io/badge/Envronment%3A%20AWS-run%20failed-critical?style=flat > ./badges/env/dnanexus.svg
-        fi
-    after_script:
-      - module load awscli/1.19.17
-      - >
-        export AWS_ACCESS_KEY_ID=${aws_accesskeyid}
-        export AWS_SECRET_ACCESS_KEY=${aws_secretaccesskey}
-        aws configure set region ${aws_region}
-      - aws s3 rm s3://bicf-output/ci-env/auth/ --recursive
-      - aws s3 rm s3://bicf-output/ci-env/input/ --recursive
-    artifacts:
-      when: always
-      paths:
-        - badges/
-    allow_failure: true
\ No newline at end of file
+        echo ${status} &&
+        sleep 30
+      done
+    - >
+      if [ "${status}" == "SUCCEEDED" ]; then
+        curl --request GET https://img.shields.io/badge/Envronment%3A%20AWS-run%20succesful-success?style=flat > ./badges/env/dnanexus.svg
+      else
+        curl --request GET https://img.shields.io/badge/Envronment%3A%20AWS-run%20failed-critical?style=flat > ./badges/env/dnanexus.svg
+      fi
+  after_script:
+    - module load awscli/1.19.17
+    - >
+      export AWS_ACCESS_KEY_ID=${aws_accesskeyid}
+      export AWS_SECRET_ACCESS_KEY=${aws_secretaccesskey}
+      aws configure set region ${aws_region}
+    - aws s3 rm s3://bicf-output/ci-env/auth/ --recursive
+    - aws s3 rm s3://bicf-output/ci-env/input/ --recursive
+  artifacts:
+    when: always
+    paths:
+      - badges/
+  allow_failure: true
\ No newline at end of file