diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index 12cb63d6e9ac3bd584a0dbe6fb2a24e1394de046..7d9f92e0f3e70fde2631f937a8265e4ade6be014 100644 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -2155,7 +2155,7 @@ process finalizeExecutionRun { rid=\$(python3 ${script_uploadExecutionRun_finalizeExecutionRun} -r ${repRID} -w \${workflow} -g \${genome} -i ${inputBagRID} -s Success -d 'Run Successful' -o ${source} -c \${cookie} -u ${executionRunRID}) echo LOG: execution run RID marked as successful - \${rid} >> ${repRID}.finalizeExecutionRun.log - dt=`date --utc +%FT%TZ` + dt=`date +%FT%T.%3N%:z` curl -H 'Content-Type: application/json' -X PUT -d \ '{ \ "ID": "${workflow.sessionId}" \ @@ -2245,7 +2245,7 @@ process failPreExecutionRun { echo LOG: execution run RID updated - \${executionRun_rid} >> ${repRID}.failPreExecutionRun.log fi - dt=`date --utc +%FT%TZ` + dt=`date +%FT%T.%3N%:z` curl -H 'Content-Type: application/json' -X PUT -d \ '{ \ "ID": "${workflow.sessionId}" \ @@ -2336,7 +2336,7 @@ process failExecutionRun { echo LOG: execution run RID marked as error - \${rid} >> ${repRID}.failExecutionRun.log fi - dt=`date --utc +%FT%TZ` + dt=`date +%FT%T.%3N%:z` curl -H 'Content-Type: application/json' -X PUT -d \ '{ \ "ID": "${workflow.sessionId}" \