From 0a4b00a6863f1c962459906b3b612a443df1b8bf Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 11 Feb 2021 13:15:39 -0600
Subject: [PATCH] Nextflow-ify

---
 {workflow => contents}/conf/.gitkeep                          | 0
 {workflow => contents}/conf/Execution_Run_For_Output_Bag.json | 0
 {workflow => contents}/conf/Replicate_For_Input_Bag.json      | 0
 {workflow => contents}/conf/aws.config                        | 0
 {workflow => contents}/conf/biohpc.config                     | 0
 {workflow => contents}/conf/biohpc_local.config               | 0
 {workflow => contents}/conf/biohpc_max.config                 | 0
 {workflow => contents}/conf/dnanexus.config                   | 0
 {workflow => contents}/conf/local.config                      | 0
 {workflow => contents}/conf/multiqc_config.yaml               | 0
 {workflow => contents}/conf/ondemand.config                   | 0
 {workflow => contents}/conf/spot.config                       | 0
 workflow/rna-seq.nf => contents/main.nf                       | 0
 {workflow => contents}/nextflow.config                        | 0
 14 files changed, 0 insertions(+), 0 deletions(-)
 rename {workflow => contents}/conf/.gitkeep (100%)
 rename {workflow => contents}/conf/Execution_Run_For_Output_Bag.json (100%)
 rename {workflow => contents}/conf/Replicate_For_Input_Bag.json (100%)
 rename {workflow => contents}/conf/aws.config (100%)
 rename {workflow => contents}/conf/biohpc.config (100%)
 rename {workflow => contents}/conf/biohpc_local.config (100%)
 rename {workflow => contents}/conf/biohpc_max.config (100%)
 rename {workflow => contents}/conf/dnanexus.config (100%)
 rename {workflow => contents}/conf/local.config (100%)
 rename {workflow => contents}/conf/multiqc_config.yaml (100%)
 rename {workflow => contents}/conf/ondemand.config (100%)
 rename {workflow => contents}/conf/spot.config (100%)
 rename workflow/rna-seq.nf => contents/main.nf (100%)
 rename {workflow => contents}/nextflow.config (100%)

diff --git a/workflow/conf/.gitkeep b/contents/conf/.gitkeep
similarity index 100%
rename from workflow/conf/.gitkeep
rename to contents/conf/.gitkeep
diff --git a/workflow/conf/Execution_Run_For_Output_Bag.json b/contents/conf/Execution_Run_For_Output_Bag.json
similarity index 100%
rename from workflow/conf/Execution_Run_For_Output_Bag.json
rename to contents/conf/Execution_Run_For_Output_Bag.json
diff --git a/workflow/conf/Replicate_For_Input_Bag.json b/contents/conf/Replicate_For_Input_Bag.json
similarity index 100%
rename from workflow/conf/Replicate_For_Input_Bag.json
rename to contents/conf/Replicate_For_Input_Bag.json
diff --git a/workflow/conf/aws.config b/contents/conf/aws.config
similarity index 100%
rename from workflow/conf/aws.config
rename to contents/conf/aws.config
diff --git a/workflow/conf/biohpc.config b/contents/conf/biohpc.config
similarity index 100%
rename from workflow/conf/biohpc.config
rename to contents/conf/biohpc.config
diff --git a/workflow/conf/biohpc_local.config b/contents/conf/biohpc_local.config
similarity index 100%
rename from workflow/conf/biohpc_local.config
rename to contents/conf/biohpc_local.config
diff --git a/workflow/conf/biohpc_max.config b/contents/conf/biohpc_max.config
similarity index 100%
rename from workflow/conf/biohpc_max.config
rename to contents/conf/biohpc_max.config
diff --git a/workflow/conf/dnanexus.config b/contents/conf/dnanexus.config
similarity index 100%
rename from workflow/conf/dnanexus.config
rename to contents/conf/dnanexus.config
diff --git a/workflow/conf/local.config b/contents/conf/local.config
similarity index 100%
rename from workflow/conf/local.config
rename to contents/conf/local.config
diff --git a/workflow/conf/multiqc_config.yaml b/contents/conf/multiqc_config.yaml
similarity index 100%
rename from workflow/conf/multiqc_config.yaml
rename to contents/conf/multiqc_config.yaml
diff --git a/workflow/conf/ondemand.config b/contents/conf/ondemand.config
similarity index 100%
rename from workflow/conf/ondemand.config
rename to contents/conf/ondemand.config
diff --git a/workflow/conf/spot.config b/contents/conf/spot.config
similarity index 100%
rename from workflow/conf/spot.config
rename to contents/conf/spot.config
diff --git a/workflow/rna-seq.nf b/contents/main.nf
similarity index 100%
rename from workflow/rna-seq.nf
rename to contents/main.nf
diff --git a/workflow/nextflow.config b/contents/nextflow.config
similarity index 100%
rename from workflow/nextflow.config
rename to contents/nextflow.config
-- 
GitLab