From 09f0922a1ef1203ae4c4d176acf2aabdd6d91fdd Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 19 Mar 2021 15:55:45 -0500
Subject: [PATCH] Add note in readme

---
 README.md | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/README.md b/README.md
index 4ca7db3..d39bab1 100644
--- a/README.md
+++ b/README.md
@@ -122,6 +122,8 @@ This pipeline is also capable of being run on AWS and DNAnexus. To do so:
     --instance-type mem1_ssd1_v2_x16 \
     --input-json "$(envsubst < ./docs/nxf_dnanexus-ci-test.json)"
   ```
+### NOTE:
+* File locations used in cloud deployments (auth files and output folder) need to be accessible in that environment (eg s3 location, or DNAnexus location). Local paths cannot be read local locations.
 <hr>
 To generate you own references or new references:
 ------------------------------------------
-- 
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