From 09dd7af3d74afb929ab5635da8c5296e6c368356 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Wed, 27 Jan 2021 11:03:43 -0600
Subject: [PATCH] Fix stranded variable
---
workflow/rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index ad2a7ba..d79e7cc 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -373,7 +373,7 @@ process parseMetadata {
if [ "${strandedForce}" != "" ]
then
stranded=${strandedForce}
- echo -e "LOG: spike-in metadata forced: \${spike}" >> ${repRID}.parseMetadata.log
+ echo -e "LOG: spike-in metadata forced: \${stranded}" >> ${repRID}.parseMetadata.log
fi
# get spike-in metadata
--
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