From 07f3c00ed037dd158bc05ed53b24eced436530a8 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 27 Apr 2020 20:16:17 -0500
Subject: [PATCH] Add extra params for tracking
---
workflow/rna-seq.nf | 7 +++++--
1 file changed, 5 insertions(+), 2 deletions(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 06d237c..716e532 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -48,6 +48,7 @@ script_inferMeta = Channel.fromPath("${baseDir}/scripts/inferMeta.sh")
* trackStart: track start of pipeline
*/
params.ci = false
+params.dev = false
process trackStart {
script:
"""
@@ -59,10 +60,12 @@ process trackStart {
"sessionId": "${workflow.sessionId}", \
"pipeline": "gudmap.rbk_rnaseq", \
"start": "${workflow.start}", \
+ "repRID": ${reRID} \
"astrocyte": false, \
"status": "started", \
- "nextflowVersion": "${workflow.nextflow.version}",
- "ci": ${params.ci}}' \
+ "nextflowVersion": "${workflow.nextflow.version}", \
+ "ci": ${params.ci}, \
+ "dev": ${params.dev}}' \
"https://xku43pcwnf.execute-api.us-east-1.amazonaws.com/ProdDeploy/pipeline-tracking"
"""
}
--
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