From 079a7f6c8b7bd4a034c81b47f5cb3c60365e5ca5 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 3 Aug 2020 21:10:25 -0500
Subject: [PATCH] Fix median TIN output
---
workflow/scripts/tinHist.py | 6 ++++--
1 file changed, 4 insertions(+), 2 deletions(-)
diff --git a/workflow/scripts/tinHist.py b/workflow/scripts/tinHist.py
index 6cff3b9..e97b120 100644
--- a/workflow/scripts/tinHist.py
+++ b/workflow/scripts/tinHist.py
@@ -35,7 +35,9 @@ def main():
hist = hist.T.fillna(0.0).astype(int)
#hist = hist.apply(lambda x: x/x.sum()*100, axis=1)
hist.to_csv(args.repRID + '.tin.hist.tsv',sep='\t')
- tin['TIN'][(tin['TIN']!=0)].median().to_csv(args.repRID + '.tin.med.csv',sep=',')
+ medFile = open(args.repRID + '.tin.med.csv',"w")
+ medFile.write(str(round(tin['TIN'][(tin['TIN']!=0)].median())))
+ medFile.close()
if __name__ == '__main__':
- main()
\ No newline at end of file
+ main()
--
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