From 07007f49037d018b5d279b16203cbf39e8953987 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Sat, 18 Jan 2020 23:07:52 -0600
Subject: [PATCH] Add unit test for parseMetadata
---
workflow/rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 0e406aa..531447b 100755
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -117,7 +117,7 @@ process parseMetadata {
ulimit -a >>${repRID_parseMetadata}.parseMetadata.err
# Check replicate RID metadata
- rep=\$(python ${baseDir}/scripts/parseMeta.py -r ${repRID_parseMetadata} -m "${fileMeta}" -p repRID)
+ rep=\$(python3 ${baseDir}/scripts/parseMeta.py -r ${repRID_parseMetadata} -m "${fileMeta}" -p repRID)
echo "LOG: replicate RID metadata parsed: \${rep}" >>${repRID_parseMetadata}.parseMetadata.err
# Get endedness metadata
--
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