From 05309583dba57ccbdf430cda379f83bc0636d259 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Wed, 6 Jan 2021 22:45:17 -0600
Subject: [PATCH] Update echo to csv files
---
workflow/rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index a4e2d0c..051de24 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -886,7 +886,7 @@ process inferMetadata {
echo "\${ends},\${stranded},\${spike},\${species},\${align_ercc},\${align_hu},\${align_mo},\${percentF},\${percentR},\${fail}" 1>> infer.csv
# save species error file
- echo -e "\${speciesError},\${speciesError}" > speciesError.csv
+ echo -e "\${speciesError},\${speciesError_details}" > speciesError.csv
"""
}
--
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