From 0511ac1aec6e4328bab0d9c3a6a886ef90d4cd4c Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 26 Jan 2021 11:40:13 -0600
Subject: [PATCH] Double excape slash

---
 workflow/rna-seq.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index c984b25..73f293d 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -2217,7 +2217,7 @@ process uploadOutputBag {
   loc=\$(deriva-hatrac-cli --host ${source} put ./\${file} /hatrac/resources/rnaseq/pipeline/output_bag/study/${studyRID}/replicate/${repRID}/\${file} --parents)
   echo LOG: output bag uploaded - \${loc} >> ${repRID}.uploadOutputBag.log
   # url-ify the location
-  loc=\${loc//\//%2F}
+  loc=\${loc//\\//%2F}
   loc=\${loc//:/%3A}
   loc=\${loc// /@20}
 
-- 
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