From 04e986c05bb8e6edc2a2ff027d64ccff38185752 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 4 Jan 2021 19:15:41 -0600
Subject: [PATCH] Fix variable name in fail
---
workflow/rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 3b34364..929d464 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -2002,7 +2002,7 @@ process failExecutionRun {
else
endInfer="unknown"
fi
- pipelineError_details=\$(echo \${pipelineError_details}"Paired_End: submitted value = \\""\${endMeta}"\\" while inferred value = \\""\${endsInfer}"\\". ")
+ pipelineError_details=\$(echo \${pipelineError_details}"Paired_End: submitted value = \\""\${endMeta}"\\" while inferred value = \\""\${endInfer}"\\". ")
#pipelineError_details=\$(echo \${pipelineError_details}"|*Paired_End*|"\${endMeta}"|"\${endsInfer}"|\\n ")
fi
if ${pipelineError_stranded}
--
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