diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index 3b34364147027093b61875f568abd97d3bedeb7c..929d4645d12dd77a80a223075d78afa5a052813c 100644 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -2002,7 +2002,7 @@ process failExecutionRun { else endInfer="unknown" fi - pipelineError_details=\$(echo \${pipelineError_details}"Paired_End: submitted value = \\""\${endMeta}"\\" while inferred value = \\""\${endsInfer}"\\". ") + pipelineError_details=\$(echo \${pipelineError_details}"Paired_End: submitted value = \\""\${endMeta}"\\" while inferred value = \\""\${endInfer}"\\". ") #pipelineError_details=\$(echo \${pipelineError_details}"|*Paired_End*|"\${endMeta}"|"\${endsInfer}"|\\n ") fi if ${pipelineError_stranded}